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» Unfolding of Microarray Data
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BMCBI
2005
89views more  BMCBI 2005»
13 years 8 months ago
MILANO - custom annotation of microarray results using automatic literature searches
Background: High-throughput genomic research tools are becoming standard in the biologist's toolbox. After processing the genomic data with one of the many available statisti...
Ran Rubinstein, Itamar Simon
BIRD
2007
Springer
118views Bioinformatics» more  BIRD 2007»
14 years 22 hour ago
Biological Network Inference Using Redundancy Analysis
The paper presents MRNet, an original method for inferring genetic networks from microarray data. This method is based on maximum relevance/minimum redundancy (MRMR), an effective ...
Patrick Emmanuel Meyer, Kevin Kontos, Gianluca Bon...
JMLR
2010
136views more  JMLR 2010»
13 years 2 months ago
Evaluation Method for Feature Rankings and their Aggregations for Biomarker Discovery
In this paper we investigate the problem of evaluating ranked lists of biomarkers, which are typically an output of the analysis of high-throughput data. This can be a list of pro...
Ivica Slavkov, Bernard Zenko, Saso Dzeroski
BMCBI
2006
126views more  BMCBI 2006»
13 years 8 months ago
OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments
Background: Differentially expressed genes are typically identified by analyzing the variation between replicate measurements. These procedures implicitly assume that there are no...
Morgan N. Price, Adam P. Arkin, Eric J. Alm
BMCBI
2007
151views more  BMCBI 2007»
13 years 8 months ago
A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microar
Background: The incorporation of prior biological knowledge in the analysis of microarray data has become important in the reconstruction of transcription regulatory networks in a...
Peter Larsen, Eyad Almasri, Guanrao Chen, Yang Dai