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BMCBI
2010
123views more  BMCBI 2010»
15 years 2 months ago
A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction
Background: Predicting which molecules can bind to a given binding site of a protein with known 3D structure is important to decipher the protein function, and useful in drug desi...
Brice Hoffmann, Mikhail Zaslavskiy, Jean-Philippe ...
IPPS
2007
IEEE
15 years 8 months ago
Load Miss Prediction - Exploiting Power Performance Trade-offs
— Modern CPUs operate at GHz frequencies, but the latencies of memory accesses are still relatively large, in the order of hundreds of cycles. Deeper cache hierarchies with large...
Konrad Malkowski, Greg M. Link, Padma Raghavan, Ma...
HPDC
1997
IEEE
15 years 6 months ago
Supporting Parallel Applications on Clusters of Workstations: The Intelligent Network Interface Approach
This paper presents a novel networking architecture designed for communication intensive parallel applications running on clusters of workstations (COWs) connected by highspeed ne...
Marcel-Catalin Rosu, Karsten Schwan, Richard Fujim...
APPT
2009
Springer
15 years 9 months ago
Computational Performance of a Parallelized Three-Dimensional High-Order Spectral Element Toolbox
In this paper, a comprehensive performance review of an MPI-based high-order three-dimensional spectral element method C++ toolbox is presented. The focus is put on the performance...
Christoph Bosshard, Roland Bouffanais, Christian C...
WOSP
1998
ACM
15 years 6 months ago
Poems: end-to-end performance design of large parallel adaptive computational systems
The POEMS project is creating an environment for end-to-end performance modeling of complex parallel and distributed systems, spanning the domains of application software, runti...
Ewa Deelman, Aditya Dube, Adolfy Hoisie, Yong Luo,...