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FPL
2008
Springer
150views Hardware» more  FPL 2008»
15 years 4 months ago
Compiler generated systolic arrays for wavefront algorithm acceleration on FPGAs
Wavefront algorithms, such as the Smith-Waterman algorithm, are commonly used in bioinformatics for exact local and global sequence alignment. These algorithms are highly computat...
Betul Buyukkurt, Walid A. Najjar
112
Voted
ICS
2009
Tsinghua U.
15 years 9 months ago
Adagio: making DVS practical for complex HPC applications
Power and energy are first-order design constraints in high performance computing. Current research using dynamic voltage scaling (DVS) relies on trading increased execution time...
Barry Rountree, David K. Lowenthal, Bronis R. de S...
ERSA
2004
130views Hardware» more  ERSA 2004»
15 years 3 months ago
Computing Lennard-Jones Potentials and Forces with Reconfigurable Hardware
Abstract-- Technological advances have made FPGAs an attractive platform for the acceleration of complex scientific applications. These applications demand high performance and hig...
Ronald Scrofano, Viktor K. Prasanna
132
Voted
SAC
2009
ACM
15 years 9 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
119
Voted
CLUSTER
2008
IEEE
15 years 9 months ago
A trace-driven emulation framework to predict scalability of large clusters in presence of OS Jitter
—Various studies have pointed out the debilitating effects of OS Jitter on the performance of parallel applications on large clusters such as the ASCI Purple and the Mare Nostrum...
Pradipta De, Ravi Kothari, Vijay Mann