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» Using Multiple Alignments to Improve Gene Prediction
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141
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CF
2008
ACM
15 years 5 months ago
Cell-SWat: modeling and scheduling wavefront computations on the cell broadband engine
This paper contributes and evaluates a model and a methodology for implementing parallel wavefront algorithms on the Cell Broadband Engine. Wavefront algorithms are vital in sever...
Ashwin M. Aji, Wu-chun Feng, Filip Blagojevic, Dim...
150
Voted
PROMISE
2010
14 years 10 months ago
The relationship between search based software engineering and predictive modeling
Search Based Software Engineering (SBSE) is an approach to software engineering in which search based optimization algorithms are used to identify optimal or near optimal solution...
Mark Harman
144
Voted
BMCBI
2005
152views more  BMCBI 2005»
15 years 3 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
121
Voted
BMCBI
2008
95views more  BMCBI 2008»
15 years 3 months ago
Identification and correction of abnormal, incomplete and mispredicted proteins in public databases
Background: Despite significant improvements in computational annotation of genomes, sequences of abnormal, incomplete or incorrectly predicted genes and proteins remain abundant ...
Alinda Nagy, Hédi Hegyi, Krisztina Farkas, ...
140
Voted
BMCBI
2004
123views more  BMCBI 2004»
15 years 3 months ago
galaxieEST: addressing EST identity through automated phylogenetic analysis
Background: Research involving expressed sequence tags (ESTs) is intricately coupled to the existence of large, well-annotated sequence repositories. Comparatively complete and sa...
R. Henrik Nilsson, Balaji Rajashekar, Karl-Henrik ...