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» Using OWL to model biological knowledge
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BMCBI
2004
123views more  BMCBI 2004»
13 years 7 months ago
A two-way interface between limited Systems Biology Markup Language and R
Background: Systems Biology Markup Language (SBML) is gaining broad usage as a standard for representing dynamical systems as data structures. The open source statistical programm...
Tomas Radivoyevitch
DEXAW
2005
IEEE
108views Database» more  DEXAW 2005»
14 years 1 months ago
Developing an Ontology for the Domain Name System
Ontologies provide a means of modelling and representing a knowledge domain. Such representation, already used in purpose-built distributed information systems, can also be of gre...
Nickolas J. G. Falkner, Paul D. Coddington, Andrew...
ILP
2005
Springer
14 years 1 months ago
Machine Learning for Systems Biology
In this paper we survey work being conducted at Imperial College on the use of machine learning to build Systems Biology models of the effects of toxins on biochemical pathways. Se...
Stephen Muggleton
BMCBI
2004
144views more  BMCBI 2004»
13 years 7 months ago
PASBio: predicate-argument structures for event extraction in molecular biology
Background: The exploitation of information extraction (IE), a technology aiming to provide instances of structured representations from free-form text, has been rapidly growing w...
Tuangthong Wattarujeekrit, Parantu K. Shah, Nigel ...
ER
2007
Springer
187views Database» more  ER 2007»
14 years 1 months ago
Metamodeling Integration Architecture for Open Biomedical Ontologies: The GO Extensions' Case Study
New technologies used in biology are generating huge quantities of data; up to two petabytes of overall data are to be expected by the end of the decade. Modern biology also has t...
Marie-Noëlle Terrasse, Marinette Savonnet, Er...