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» Using PQ Trees for Comparative Genomics
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BMCBI
2011
13 years 2 months ago
N-gram analysis of 970 microbial organisms reveals presence of biological language models
Background: It has been suggested previously that genome and proteome sequences show characteristics typical of natural-language texts such as “signature-style” word usage ind...
Hatice U. Osmanbeyoglu, Madhavi Ganapathiraju
RECOMB
2009
Springer
14 years 8 months ago
Storage and Retrieval of Individual Genomes
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...
Gonzalo Navarro, Jouni Sirén, Niko Väl...
NAR
2007
115views more  NAR 2007»
13 years 7 months ago
DroSpeGe: rapid access database for new Drosophila species genomes
The Drosophila species comparative genome database DroSpeGe (http://insects.eugenes.org/ DroSpeGe/) provides genome researchers with rapid, usable access to 12 new and old Drosoph...
Donald G. Gilbert
ISMB
2007
13 years 10 months ago
Automatic genome-wide reconstruction of phylogenetic gene trees
Gene duplication and divergence is a major evolutionary force. Despite the growing number of fully sequenced genomes, methods for investigating these events on a genome-wide scale...
Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Reg...
GECCO
2003
Springer
121views Optimization» more  GECCO 2003»
14 years 25 days ago
Evolving Hogg's Quantum Algorithm Using Linear-Tree GP
Intermediate measurements in quantum circuits compare to conditional branchings in programming languages. Due to this, quantum circuits have a natural linear-tree structure. In thi...
André Leier, Wolfgang Banzhaf