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BMCBI
2006
129views more  BMCBI 2006»
13 years 8 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
KDD
2009
ACM
169views Data Mining» more  KDD 2009»
14 years 3 months ago
On burstiness-aware search for document sequences
As the number and size of large timestamped collections (e.g. sequences of digitized newspapers, periodicals, blogs) increase, the problem of efficiently indexing and searching su...
Theodoros Lappas, Benjamin Arai, Manolis Platakis,...
BMCBI
2007
174views more  BMCBI 2007»
13 years 8 months ago
ESTuber db: an online database for Tuber borchii EST sequences
Background: The ESTuber database (http://www.itb.cnr.it/estuber) includes 3,271 Tuber borchii expressed sequence tags (EST). The dataset consists of 2,389 sequences from an in-hou...
Barbara Lazzari, Andrea Caprera, Cristian Cosentin...
BMCBI
2011
13 years 11 days ago
GPCR-SSFE: A comprehensive database of G-protein-coupled receptor template predictions and homology models
Background: G protein-coupled receptors (GPCRs) transduce a wide variety of extracellular signals to within the cell and therefore have a key role in regulating cell activity and ...
Catherine L. Worth, Annika Kreuchwig, Gunnar Klein...
BIRTHDAY
2010
Springer
14 years 1 months ago
Indexing and Searching a Mass Spectrometry Database
Abstract. Database preprocessing in order to create an index often permits considerable speedup in search compared to the iterated query of an unprocessed database. In this paper w...
Søren Besenbacher, Benno Schwikowski, Jens ...