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CIBCB
2009
IEEE
13 years 10 months ago
An application of the metric access methods to the mass spectrometry data
Mass spectrometry is a very popular method for protein and peptide identification nowadays. Abundance of data generated in this way grows exponentially every year and although ther...
Jiri Novák, David Hoksza
BMCBI
2002
133views more  BMCBI 2002»
13 years 8 months ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
DASFAA
2006
IEEE
126views Database» more  DASFAA 2006»
14 years 2 months ago
An Efficient Approach for Mining Top-K Fault-Tolerant Repeating Patterns
Abstract. In this paper, an efficient strategy for mining top-K non-trivial faulttolerant repeating patterns (FT-RPs in short) with lengths no less than min_len from data sequences...
Jia-Ling Koh, Yu-Ting Kung
TC
2010
13 years 7 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
CIVR
2009
Springer
212views Image Analysis» more  CIVR 2009»
14 years 3 months ago
Video copy detection by fast sequence matching
Sequence matching techniques are effective for comparing two videos. However, existing approaches suffer from demanding computational costs and thus are not scalable for large-sca...
Mei-Chen Yeh, Kwang-Ting Cheng