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RECOMB
2004
Springer
14 years 7 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
NAR
2008
100views more  NAR 2008»
13 years 7 months ago
DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture
We present DAhunter, a web-based server that identifies homologous proteins by comparing domain architectures, the organization of protein domains. A major obstacle in comparison ...
Byungwook Lee, Doheon Lee
BIBM
2009
IEEE
151views Bioinformatics» more  BIBM 2009»
14 years 2 months ago
Detection of Gene Orthology Based on Protein-Protein Interaction Networks
Abstract—Ortholog detection methods present a powerful approach for finding genes that participate in similar biological processes across different organisms, extending our unde...
Fadi Towfic, M. Heather West Greenlee, Vasant Hona...
EWMF
2005
Springer
14 years 28 days ago
Discovering a Term Taxonomy from Term Similarities Using Principal Component Analysis
Abstract. We show that eigenvector decomposition can be used to extract a term taxonomy from a given collection of text documents. So far, methods based on eigenvector decompositio...
Holger Bast, Georges Dupret, Debapriyo Majumdar, B...
CSB
2005
IEEE
223views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Automatic Protein Function Annotation through Candidate Ortholog Clusters from Incomplete Genomes
Annotation of protein function often arises in the context of partially complete genomes but is not adequately addressed. We present an annotation method by extracting ortholog cl...
Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muc...