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BMCBI
2005
148views more  BMCBI 2005»
13 years 7 months ago
NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans
Background: NemaFootPrinter (Nematode Transcription Factor Scan Through Philogenetic Footprinting) is a web-based software for interactive identification of conserved, non-exonic ...
Davide Rambaldi, Alessandro Guffanti, Paolo Morand...
KDD
2007
ACM
193views Data Mining» more  KDD 2007»
14 years 7 months ago
Joint optimization of wrapper generation and template detection
Many websites have large collections of pages generated dynamically from an underlying structured source like a database. The data of a category are typically encoded into similar...
Shuyi Zheng, Ruihua Song, Ji-Rong Wen, Di Wu
BMCBI
2006
143views more  BMCBI 2006»
13 years 7 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
BMCBI
2011
13 years 2 months ago
Logical Development of the Cell Ontology
Background: The Cell Ontology (CL) is an ontology for the representation of in vivo cell types. As biological ontologies such as the CL grow in complexity, they become increasingl...
Terrence F. Meehan, Anna Maria Masci, Amina Abdull...
NAR
2011
199views Computer Vision» more  NAR 2011»
12 years 10 months ago
FragmentStore - a comprehensive database of fragments linking metabolites, toxic molecules and drugs
Consideration of biomolecules in terms of their molecular building blocks provides valuable new information regarding their synthesis, degradation and similarity. Here, we present...
Jessica Ahmed, Catherine L. Worth, Paul Florian Th...