104 search results - page 5 / 21 » Using an alignment of fragment strings for comparing protein... |
BMCBI
2010
13 years 7 months ago
2010
Background: Protein loops encompass 50% of protein residues in available three-dimensional structures. These regions are often involved in protein functions, e.g. binding site, ca...
BIBE
2005
IEEE
14 years 1 months ago
2005
IEEE
We have recently demonstrated (La et al, Proteins, 58:2005) that sequence fragments approximating the overall familial phylogeny, called phylogenetic motifs (PMs), represent a pro...
ICML
2007
IEEE
14 years 8 months ago
2007
IEEE
Structural alignments are the most widely used tools for comparing proteins with low sequence similarity. The main contribution of this paper is to derive various kernels on prote...
BMCBI
2007
13 years 7 months ago
2007
Background: For successful protein structure prediction by comparative modeling, in addition to identifying a good template protein with known structure, obtaining an accurate seq...
BMCBI
2008
13 years 7 months ago
2008
Background: Structural alignment is an important step in protein comparison. Well-established methods exist for solving this problem under the assumption that the structures under...