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BMCBI
2007
124views more  BMCBI 2007»
15 years 4 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...
117
Voted
GCB
2005
Springer
117views Biometrics» more  GCB 2005»
15 years 9 months ago
Generation of 3D templates of active sites of proteins with rigid prosthetic groups
Motivation: With the increasing availability of protein structures, the generation of biologically meaningful 3D patterns from the simultaneous alignment of several protein struct...
Jean-Christophe Nebel
ICIP
2002
IEEE
16 years 5 months ago
Retrieval of 3D protein structures
A protein molecule is made of a long chain of amino acid sequences that fold into a complex three-dimensional structure. It is often the geometrical shapes that determine the prot...
Shann-Ching Chen, Tsuhan Chen
BMCBI
2010
122views more  BMCBI 2010»
15 years 4 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth
127
Voted
ISMIR
2005
Springer
123views Music» more  ISMIR 2005»
15 years 9 months ago
Polyphonic Musical Sequence Alignment for Database Search
Finding the best matching database target to a melodic query has been of great interest in the music IR world. The string alignment paradigm works well for this task when comparin...
Bryan Pardo, Manan Sanghi