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» Using constraint programming for lattice protein folding
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RECOMB
2006
Springer
14 years 8 months ago
Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation
Abstract. This paper presents a new method for studying protein folding kinetics. It uses the recently introduced Stochastic Roadmap Simulation (SRS) method to estimate the transit...
Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L...
RECOMB
2001
Springer
14 years 8 months ago
Predicting the beta-helix fold from protein sequence data
A method is presented that uses b-strand interactions to predict the parallel right-handed b-helix super-secondary structural motif in protein sequences. A program called BetaWrap...
Phil Bradley, Lenore Cowen, Matthew Menke, Jonatha...
CORR
2010
Springer
124views Education» more  CORR 2010»
13 years 5 months ago
Lattice model refinement of protein structures
To find the best lattice model representation of a given full atom protein structure is a hard computational problem. Several greedy methods have been suggested where results are ...
Martin Mann, Alessandro Dal Palù
BMCBI
2010
146views more  BMCBI 2010»
13 years 7 months ago
A pairwise residue contact area-based mean force potential for discrimination of native protein structure
Background: Considering energy function to detect a correct protein fold from incorrect ones is very important for protein structure prediction and protein folding. Knowledge-base...
Shahriar Arab, Mehdi Sadeghi, Changiz Eslahchi, Ha...
KDD
2009
ACM
175views Data Mining» more  KDD 2009»
14 years 10 days ago
Multi-class protein fold recognition using large margin logic based divide and conquer learning
Inductive Logic Programming (ILP) systems have been successfully applied to solve complex problems in bioinformatics by viewing them as binary classification tasks. It remains an...
Huma Lodhi, Stephen Muggleton, Michael J. E. Stern...