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» Using constraint programming for lattice protein folding
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GECCO
2007
Springer
154views Optimization» more  GECCO 2007»
14 years 1 months ago
A novel ab-initio genetic-based approach for protein folding prediction
In this paper, a model based on genetic algorithms for protein folding prediction is proposed. The most important features of the proposed approach are: i) Heuristic secondary str...
Sergio Raul Duarte Torres, David Camilo Becerra Ro...
BMCBI
2007
168views more  BMCBI 2007»
13 years 7 months ago
Benchmarking consensus model quality assessment for protein fold recognition
Background: Selecting the highest quality 3D model of a protein structure from a number of alternatives remains an important challenge in the field of structural bioinformatics. M...
Liam J. McGuffin
ENTCS
2008
116views more  ENTCS 2008»
13 years 7 months ago
Computational Origami Construction as Constraint Solving and Rewriting
Computational origami is the computer assisted study of mathematical and computational aspects of origami. An origami is constructed by a finite sequence of fold steps, each consi...
Tetsuo Ida, Mircea Marin, Hidekazu Takahashi, Fado...
APLAS
2003
ACM
14 years 1 months ago
Constraint Functional Logic Programming for Origami Construction
We describe origami programming methodology based on constraint functional logic programming. The basic operations of origami are reduced to solving systems of equations which desc...
Tetsuo Ida, Mircea Marin, Hidekazu Takahashi
CP
2005
Springer
14 years 1 months ago
Applying Constraint Programming to Rigid Body Protein Docking
In this paper we show how Constraint Programming (CP) techniques can improve the efficiency and applicability of grid-based algorithms for optimising surface contact between comple...
Ludwig Krippahl, Pedro Barahona