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» Using probabilistic model checking in systems biology
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FOSSACS
2001
Springer
14 years 1 months ago
Model Checking CTL+ and FCTL is Hard
Abstract. Among the branching-time temporal logics used for the specification and verification of systems, CTL+ , FCTL and ECTL+ are the most notable logics for which the precise...
François Laroussinie, Nicolas Markey, Ph. S...
LSGRID
2004
Springer
14 years 2 months ago
Distributed Cell Biology Simulations with E-Cell System
Many useful applications of simulation in computational cell biology, e.g. kinetic parameter estimation, Metabolic Control Analysis (MCA), and bifurcation analysis, require a large...
Masahiro Sugimoto, Kouichi Takahashi, Tomoya Kitay...
BMCBI
2008
115views more  BMCBI 2008»
13 years 9 months ago
Systems biology driven software design for the research enterprise
Background: In systems biology, and many other areas of research, there is a need for the interoperability of tools and data sources that were not originally designed to be integr...
John Boyle, Christopher C. Cavnor, Sarah A. Killco...
RECOMB
2005
Springer
14 years 9 months ago
Learning Interpretable SVMs for Biological Sequence Classification
Background: Support Vector Machines (SVMs) ? using a variety of string kernels ? have been successfully applied to biological sequence classification problems. While SVMs achieve ...
Christin Schäfer, Gunnar Rätsch, Sö...
SPIN
2009
Springer
14 years 3 months ago
Identifying Modeling Errors in Signatures by Model Checking
: Most intrusion detection systems deployed today apply misuse detection as analysis method. Misuse detection searches for attack traces in the recorded audit data using predefined...
Sebastian Schmerl, Michael Vogel, Hartmut Kön...