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» Using probabilistic model checking in systems biology
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TVCG
2008
147views more  TVCG 2008»
13 years 9 months ago
Cerebral: Visualizing Multiple Experimental Conditions on a Graph with Biological Context
Systems biologists use interaction graphs to model the behavior of biological systems at the molecular level. In an iterative process, such biologists observe the reactions of livi...
Aaron Barsky, Tamara Munzner, Jennifer L. Gardy, R...
BMCBI
2007
161views more  BMCBI 2007»
13 years 9 months ago
Efficient classification of complete parameter regions based on semidefinite programming
Background: Current approaches to parameter estimation are often inappropriate or inconvenient for the modelling of complex biological systems. For systems described by nonlinear ...
Lars Kuepfer, Uwe Sauer, Pablo A. Parrilo
CAV
1999
Springer
125views Hardware» more  CAV 1999»
14 years 1 months ago
Model Checking of Safety Properties
Of special interest in formal verification are safety properties, which assert that the system always stays within some allowed region. A computation that violates a general linea...
Orna Kupferman, Moshe Y. Vardi
ISMB
2007
13 years 11 months ago
A Chado case study: an ontology-based modular schema for representing genome-associated biological information
Motivation: A few years ago, FlyBase undertook to design a new database schema to store Drosophila data. It would fully integrate genomic sequence and annotation data with bibliog...
Chris Mungall, David B. Emmert
WSC
2007
13 years 11 months ago
Combining micro and macro-modeling in DEVS for computational biology
In computational biology there is an increasing need to combine micro and macro views of the system of interest. Therefore, explicit means to describe micro and macro level and th...
Adelinde M. Uhrmacher, Roland Ewald, Mathias John,...