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» Using sampling methods to improve binding site predictions
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CSB
2004
IEEE
131views Bioinformatics» more  CSB 2004»
15 years 6 months ago
Improved Fourier Transform Method for Unsupervised Cell-Cycle Regulated Gene Prediction
Motivation: Cell-cycle regulated gene prediction using microarray time-course measurements of the mRNA expression levels of genes has been used by several researchers. The popular...
Karuturi R. Krishna Murthy, Liu Jian Hua
RECOMB
2004
Springer
16 years 2 months ago
A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAs
The prediction of translation initiation sites (TISs) in eukaryotic mRNAs has been a challenging problem in computational molecular biology. In this paper, we present a new algori...
Haifeng Li, Tao Jiang
126
Voted
ISMB
2004
15 years 4 months ago
Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data
Motivation: Sigma factors regulate the expression of genes in Bacillus subtilis at the transcriptional level. First we assess the ability of currently available gene regulatory ne...
Michiel J. L. de Hoon, Yuko Makita, Seiya Imoto, K...
120
Voted
BMCBI
2006
87views more  BMCBI 2006»
15 years 2 months ago
Phylogeny based discovery of regulatory elements
Background: Algorithms that locate evolutionarily conserved sequences have become powerful tools for finding functional DNA elements, including transcription factor binding sites;...
Jason Gertz, Justin C. Fay, Barak A. Cohen
ESEM
2007
ACM
15 years 6 months ago
The Effects of Over and Under Sampling on Fault-prone Module Detection
The goal of this paper is to improve the prediction performance of fault-prone module prediction models (fault-proneness models) by employing over/under sampling methods, which ar...
Yasutaka Kamei, Akito Monden, Shinsuke Matsumoto, ...