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» Using shared arrays in message-driven parallel programs
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SAC
2009
ACM
14 years 2 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
IPPS
2010
IEEE
13 years 5 months ago
On the importance of bandwidth control mechanisms for scheduling on large scale heterogeneous platforms
We study three scheduling problems (file redistribution, independent tasks scheduling and broadcasting) on large scale heterogeneous platforms under the Bounded Multi-port Model. I...
Olivier Beaumont, Hejer Rejeb
CF
2009
ACM
14 years 2 months ago
Wave field synthesis for 3D audio: architectural prospectives
In this paper, we compare the architectural perspectives of the Wave Field Synthesis (WFS) 3D-audio algorithm mapped on three different platforms: a General Purpose Processor (GP...
Dimitris Theodoropoulos, Catalin Bogdan Ciobanu, G...
BMCBI
2010
135views more  BMCBI 2010»
13 years 7 months ago
Integration and visualization of systems biology data in context of the genome
Background: High-density tiling arrays and new sequencing technologies are generating rapidly increasing volumes of transcriptome and protein-DNA interaction data. Visualization a...
J. Christopher Bare, Tie Koide, David J. Reiss, Da...
IEEEPACT
2008
IEEE
14 years 1 months ago
The PARSEC benchmark suite: characterization and architectural implications
This paper presents and characterizes the Princeton Application Repository for Shared-Memory Computers (PARSEC), a benchmark suite for studies of Chip-Multiprocessors (CMPs). Prev...
Christian Bienia, Sanjeev Kumar, Jaswinder Pal Sin...