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» Validating associations in biological databases
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NAR
2008
122views more  NAR 2008»
13 years 9 months ago
The Rice Annotation Project Database (RAP-DB): 2008 update
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated ann...
BMCBI
2004
189views more  BMCBI 2004»
13 years 9 months ago
B.E.A.R. GeneInfo: A tool for identifying gene-related biomedical publications through user modifiable queries
Background: Once specific genes are identified through high throughput genomics technologies there is a need to sort the final gene list to a manageable size for validation studie...
Guohui Zhou, Xinyu Wen, Hang Liu, Michael J. Schli...
SIGMOD
2005
ACM
141views Database» more  SIGMOD 2005»
14 years 10 months ago
Integrating databases and workflow systems
There has been an information explosion in fields of science such as high energy physics, astronomy, environmental sciences and biology. There is a critical need for automated sys...
Srinath Shankar, Ameet Kini, David J. DeWitt, Jeff...
BMCBI
2005
292views more  BMCBI 2005»
13 years 9 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
RECOMB
2008
Springer
14 years 10 months ago
DLIGHT - Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework
Abstract. This paper presents an algorithm to detect lateral gene transfer (LGT) on the basis of pairwise evolutionary distances. The prediction is made from a likelihood ratio der...
Christophe Dessimoz, Daniel Margadant, Gaston H. G...