Given a set of strings S of equal lengths over an alphabet Σ, the closest string problem seeks a string over Σ whose maximum Hamming distance to any of the given strings is as s...
Identification of Transcription Factor Binding Site (TFBS) motifs in multiple DNA upstream sequences is important in understanding the mechanism of gene regulation. This identific...
Genetic Programming (GP) provides evolutionary methods for problems with tree representations. A recent development in Genetic Algorithms (GAs) has led to principled algorithms cal...
— Determining the optimal topology of a graph is pertinent to many domains, as graphs can be used to model a variety of systems. Evolutionary algorithms constitute a popular opti...
Background: Phylogenetic trees are an important tool for representing evolutionary relationships among organisms. In a phylogram or chronogram, the ordering of taxa is not conside...
Francesco Cerutti, Luigi Bertolotti, Tony L. Goldb...