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» Vector Algorithms for Approximate String Matching
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CPM
2000
Springer
175views Combinatorics» more  CPM 2000»
14 years 7 days ago
Approximate String Matching over Ziv-Lempel Compressed Text
Abstract. We present a solution to the problem of performing approximate pattern matching on compressed text. The format we choose is the Ziv-Lempel family, speci cally the LZ78 an...
Juha Kärkkäinen, Gonzalo Navarro, Esko U...
DASFAA
2003
IEEE
151views Database» more  DASFAA 2003»
14 years 1 months ago
Approximate String Matching in DNA Sequences
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
Lok-Lam Cheng, David Wai-Lok Cheung, Siu-Ming Yiu
FCCM
2006
IEEE
137views VLSI» more  FCCM 2006»
14 years 1 months ago
Single Pass, BLAST-Like, Approximate String Matching on FPGAs
Abstract: Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA imple...
Martin C. Herbordt, Josh Model, Yongfeng Gu, Bhara...
ICALP
2001
Springer
14 years 11 days ago
Permutation Editing and Matching via Embeddings
Abstract. If the genetic maps of two species are modelled as permutations of (homologous) genes, the number of chromosomal rearrangements in the form of deletions, block moves, inv...
Graham Cormode, S. Muthukrishnan, Süleyman Ce...
ICDAR
1999
IEEE
14 years 6 days ago
Models and Algorithms for Duplicate Document Detection
This paper introduces a framework for clarifying and formalizing the duplicate document detection problem. Four distinct models are presented, each with a corresponding algorithm ...
Daniel P. Lopresti