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» Verification of Test Suites
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CCS
2010
ACM
13 years 11 months ago
Sidebuster: automated detection and quantification of side-channel leaks in web application development
A web application is a "two-part" program, with its components deployed both in the browser and in the web server. The communication between these two components inevita...
Kehuan Zhang, Zhou Li, Rui Wang 0010, XiaoFeng Wan...
BMCBI
2008
110views more  BMCBI 2008»
13 years 11 months ago
Determining significance of pairwise co-occurrences of events in bursty sequences
Background: Event sequences where different types of events often occur close together arise, e.g., when studying potential transcription factor binding sites (TFBS, events) of ce...
Niina Haiminen, Heikki Mannila, Evimaria Terzi
BMCBI
2008
78views more  BMCBI 2008»
13 years 11 months ago
A new protein linear motif benchmark for multiple sequence alignment software
Background: Linear motifs (LMs) are abundant short regulatory sites used for modulating the functions of many eukaryotic proteins. They play important roles in post-translational ...
Emmanuel Perrodou, Claudia Chica, Olivier Poch, To...
BMCBI
2007
151views more  BMCBI 2007»
13 years 11 months ago
Minimus: a fast, lightweight genome assembler
Background: Genome assemblers have grown very large and complex in response to the need for algorithms to handle the challenges of large whole-genome sequencing projects. Many of ...
Daniel D. Sommer, Arthur L. Delcher, Steven L. Sal...
BMCBI
2008
172views more  BMCBI 2008»
13 years 11 months ago
Compo: composite motif discovery using discrete models
Background: Computational discovery of motifs in biomolecular sequences is an established field, with applications both in the discovery of functional sites in proteins and regula...
Geir Kjetil Sandve, Osman Abul, Finn Drablø...