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ICPP
2006
IEEE
14 years 23 days ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
IEEEPACT
2005
IEEE
14 years 9 days ago
Communication Optimizations for Fine-Grained UPC Applications
Global address space languages like UPC exhibit high performance and portability on a broad class of shared and distributed memory parallel architectures. The most scalable applic...
Wei-Yu Chen, Costin Iancu, Katherine A. Yelick
HPCN
1997
Springer
13 years 11 months ago
Parallel Simulation of Ion Recombination in Nonpolar Liquids
Abstract. Ion recombination in nonpolar liquids is an important problem in radiation chemistry. We have designed and implemented a parallel Monte Carlo simulation for this computat...
Frank J. Seinstra, Henri E. Bal, Hans J. W. Spoeld...
EWC
2008
85views more  EWC 2008»
13 years 6 months ago
Geometry based pre-processor for parallel fluid dynamic simulations using a hierarchical basis
The pre-processing stage of finite element analysis of the Navier-Stokes equations is becoming increasingly important as the desire for more general boundary conditions, as well a...
Anil Kumar Karanam, Kenneth E. Jansen, Christian H...
PDP
2002
IEEE
13 years 11 months ago
The CDAG: A Data Structure for Automatic Parallelization for a Multithreaded Architecture
Despite the explosive new interest in Distributed Computing, bringing software — particularly legacy software — to parallel platforms remains a daunting task. The Self Distrib...
Bernd Klauer, Frank Eschmann, Ronald Moore, Klaus ...