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VIS
2004
IEEE
148views Visualization» more  VIS 2004»
14 years 9 months ago
Detection and Visualization of Anomalous Structures in Molecular Dynamics Simulation Data
In this article we explore techniques to detect and visualize features in data from molecular dynamics (MD) simulations. Although the techniques proposed are general, we focus on ...
John Wilkins, Kaden Hazzard, Raghu Machiraju, Same...
AAAI
2006
13 years 10 months ago
Local-Search Techniques for Boolean Combinations of Pseudo-Boolean Constraints
Some search problems are most directly specified by boolean combinations of pseudo-boolean constraints. We study a logic PL(PB) whose formulas are of this form, and design local-s...
Lengning Liu, Miroslaw Truszczynski
BMCBI
2006
111views more  BMCBI 2006»
13 years 8 months ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...
VISUALIZATION
1992
IEEE
14 years 17 days ago
Display of Scientific Data Structures for Algorithm Visualization
algorithms as networks of modules. The data flow architecture is popular because of the flexibility of mixing calculation modules with display modules, and because of its easy grap...
William L. Hibbard, Charles R. Dyer, Brian E. Paul
BMCBI
2006
205views more  BMCBI 2006»
13 years 8 months ago
Application of Petri net based analysis techniques to signal transduction pathways
Background: Signal transduction pathways are usually modelled using classical quantitative methods, which are based on ordinary differential equations (ODEs). However, some diffic...
Andrea Sackmann, Monika Heiner, Ina Koch