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» Visual software tools for bioinformatics
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ICSE
2010
IEEE-ACM
13 years 9 months ago
LM: a miner for scenario-based specifications
We present LM, a tool for mining scenario-based specifications in the form of Live Sequence Charts, a visual language that extends sequence diagrams with modalities. LM comes with...
Tuan-Anh Doan, David Lo, Shahar Maoz, Siau-Cheng K...
BIOINFORMATICS
2011
12 years 11 months ago
ProDy: Protein Dynamics Inferred from Theory and Experiments
Summary: We developed a Python package, ProDy, for structurebased analysis of protein dynamics. ProDy allows for quantitative characterization of structural variations in heteroge...
Ahmet Bakan, Lidio M. Meireles, Ivet Bahar
IUI
2009
ACM
14 years 2 months ago
A scientific workflow construction command line
Workflows have emerged as a common tool for scientists to express their computational analyses. While there are a multitude of visual data flow editors for workflow construction, ...
Paul T. Groth, Yolanda Gil
UIST
1996
ACM
13 years 12 months ago
The Cage: Efficient Construction in 3D Using a Cubic Adaptive Grid
The Cage is an easy to use 3D grid. Built into a 3D modeler, it provides a visualized reference coordinate system that helps the user to orient himself in 3D space, and that suppo...
Patrick Baudisch
ISPASS
2010
IEEE
14 years 2 months ago
Visualizing complex dynamics in many-core accelerator architectures
—While many-core accelerator architectures, such as today’s Graphics Processing Units (GPUs), offer orders of magnitude more raw computing power than contemporary CPUs, their m...
Aaron Ariel, Wilson W. L. Fung, Andrew E. Turner, ...