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» Visual software tools for bioinformatics
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BMCBI
2011
13 years 2 months ago
OrthoInspector: comprehensive orthology analysis and visual exploration
Background: The accurate determination of orthology and inparalogy relationships is essential for comparative sequence analysis, functional gene annotation and evolutionary studie...
Benjamin Linard, Julie D. Thompson, Olivier Poch, ...
POPL
2008
ACM
14 years 8 months ago
From dirt to shovels: fully automatic tool generation from ad hoc data
An ad hoc data source is any semistructured data source for which useful data analysis and transformation tools are not readily available. Such data must be queried, transformed a...
Kathleen Fisher, David Walker, Kenny Qili Zhu, Pet...
WWW
2007
ACM
14 years 8 months ago
OntoWiki: A Tool for Social, Semantic Collaboration
Abstract We present OntoWiki, a tool providing support for agile, distributed knowledge engineering scenarios. OntoWiki facilitates the visual presentation of a knowledge base as a...
Jens Lehmann, Sören Auer, Sebastian Dietzold,...
BMCBI
2008
121views more  BMCBI 2008»
13 years 7 months ago
OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology
Background: Ontologies such as the Gene Ontology can enable the construction of complex queries over biological information in a conceptual way, however existing systems to do thi...
Kieran O'Neill, Alexander García Castro, An...
BMCBI
2006
112views more  BMCBI 2006»
13 years 7 months ago
MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid se
Background: Proteomics is the study of the proteome, and is critical to the understanding of cellular processes. Two central and related tasks of proteomics are protein identifica...
Harald Barsnes, Svein-Ole Mikalsen, Ingvar Eidhamm...