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BMCBI
2010
191views more  BMCBI 2010»
13 years 8 months ago
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Background: Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabili...
Jan Schellenberger, Junyoung O. Park, Tom M. Conra...
BMCBI
2007
119views more  BMCBI 2007»
13 years 8 months ago
Conceptual-level workflow modeling of scientific experiments using NMR as a case study
Background: Scientific workflows improve the process of scientific experiments by making computations explicit, underscoring data flow, and emphasizing the participation of humans...
Kacy K. Verdi, Heidi J. C. Ellis, Michael R. Gryk
UML
2001
Springer
14 years 21 days ago
UML Support for Designing Software Systems as a Composition of Design Patterns
Much of the research work on design patterns has primarily focused on discovering and documenting patterns. Design patterns promise early reuse benefits at the design stage. To rea...
Sherif M. Yacoub, Hany H. Ammar
SPRINGSIM
2010
13 years 6 months ago
Simplifying parallel and distributed simulation with the DUP system
This paper presents how the DUP System, a straightforward POSIX-compatible framework that enables programminglanguage-agnostic parallel and distributed stream processing, can be u...
Nathan S. Evans, Chris GauthierDickey, Christian G...
BMCBI
2010
144views more  BMCBI 2010»
13 years 8 months ago
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
Background: The investigation of plant genome structure and evolution requires comprehensive characterization of repetitive sequences that make up the majority of higher plant nuc...
Petr Novák, Pavel Neumann, Jirí Maca...