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PKDD
2007
Springer
87views Data Mining» more  PKDD 2007»
15 years 10 months ago
Visual Exploration of Genomic Data
Abstract. In this study, we present methods for comparative visualization of DNA sequences in two dimensions. First, we illustrate a transformation of gene sequences into numerical...
Michail Vlachos, Bahar Taneri, Eamonn J. Keogh, Ph...
ICCAD
2000
IEEE
77views Hardware» more  ICCAD 2000»
15 years 8 months ago
Improving the Proportion of At-Speed Tests in Scan BIST
A method to select the lengths of functional sequences in a BIST scheme for scan designs is proposed in this paper. A functional sequence is a sequence of primary input vectors ap...
Yu Huang, Irith Pomeranz, Sudhakar M. Reddy, Janus...
ICDM
2006
IEEE
135views Data Mining» more  ICDM 2006»
15 years 10 months ago
Discovering Frequent Poly-Regions in DNA Sequences
The problem of discovering arrangements of regions of high occurrence of one or more items of a given alphabet in a sequence, is studied, and two efficient approaches are propose...
Panagiotis Papapetrou, Gary Benson, George Kollios
ICDE
2007
IEEE
183views Database» more  ICDE 2007»
16 years 5 months ago
SpADe: On Shape-based Pattern Detection in Streaming Time Series
Monitoring predefined patterns in streaming time series is useful to applications such as trend-related analysis, sensor networks and video surveillance. Most current studies on s...
Yueguo Chen, Mario A. Nascimento, Beng Chin Ooi, A...
GECCO
2007
Springer
258views Optimization» more  GECCO 2007»
15 years 8 months ago
TFBS identification by position- and consensus-led genetic algorithm with local filtering
Identification of Transcription Factor Binding Site (TFBS) motifs in multiple DNA upstream sequences is important in understanding the mechanism of gene regulation. This identific...
Tak-Ming Chan, Kwong-Sak Leung, Kin-Hong Lee