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RECOMB
2008
Springer
16 years 5 months ago
A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery
As an increasing number of eukaryotic genomes are being sequenced, comparative studies aimed at detecting regulatory elements in intergenic sequences are becoming more prevalent. M...
Raluca Gordân, Leelavati Narlikar, Alexander...
RECOMB
2007
Springer
16 years 5 months ago
Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking
The study of biological networks and network motifs can yield significant new insights into systems biology. Previous methods of discovering network motifs ? network-centric subgra...
Joshua A. Grochow, Manolis Kellis
RECOMB
2005
Springer
16 years 5 months ago
Comparison of Protein-Protein Interaction Confidence Assignment Schemes
Recent technological advances have enabled high-throughput measurements of protein-protein interactions in the cell, producing protein interaction networks for various species at a...
Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded S...
BIBE
2007
IEEE
147views Bioinformatics» more  BIBE 2007»
15 years 11 months ago
A New Alignment-Independent Algorithm for Clustering Protein Sequences
—The rapid burgeoning of available protein data makes the use of clustering within families of proteins increasingly important, the challenge is to identify subfamilies of evolut...
Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski
GECCO
2008
Springer
155views Optimization» more  GECCO 2008»
15 years 5 months ago
Modularity and symmetry in computational embryogeny
Modularity and symmetry are two properties observed in almost every engineering and biological structure. The origin of these properties in nature is still unknown. Yet, as engine...
Or Yogev, Andrew A. Shapiro, Erik K. Antonsson