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    BMCBI
    2007
    157views more  BMCBI 2007»
    A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellula
    13 years 11 months ago
    A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellula
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    Background: The fundamental role that intrinsic stochasticity plays in cellular functions has been shown via numerous computational and experimental studies. In the face of such e...
    Asawari Samant, Babatunde A. Ogunnaike, Dionisios ...
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    BMCBI
    2008
    95views more  BMCBI 2008»
    Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method
    13 years 11 months ago
    Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method
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    Background: Large biological data sets, such as expression profiles, benefit from reduction of random noise. Principal component (PC) analysis has been used for this purpose, but ...
    Joseph W. Foley, Fumiaki Katagiri
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    BMCBI
    2008
    118views more  BMCBI 2008»
    Kismeth: Analyzer of plant methylation states through bisulfite sequencing
    13 years 11 months ago
    Kismeth: Analyzer of plant methylation states through bisulfite sequencing
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    Background: There is great interest in probing the temporal and spatial patterns of cytosine methylation states in genomes of a variety of organisms. It is hoped that this will sh...
    Eyal Gruntman, Yijun Qi, R. Keith Slotkin, Ted Roe...
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    BMCBI
    2007
    176views more  BMCBI 2007»
    The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
    13 years 11 months ago
    The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
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    Background: Information resources on the World Wide Web play an indispensable role in modern biology. But integrating data from multiple sources is often encumbered by the need to...
    J. Christopher Bare, Paul T. Shannon, Amy K. Schmi...
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    BMCBI
    2008
    162views more  BMCBI 2008»
    Background correction using dinucleotide affinities improves the performance of GCRMA
    13 years 11 months ago
    Background correction using dinucleotide affinities improves the performance of GCRMA
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    Background: High-density short oligonucleotide microarrays are a primary research tool for assessing global gene expression. Background noise on microarrays comprises a significan...
    Raad Z. Gharaibeh, Anthony Fodor, Cynthia Gibas
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