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BMCBI
2007
144views more  BMCBI 2007»
15 years 2 months ago
Motif kernel generated by genetic programming improves remote homology and fold detection
Background: Protein remote homology detection is a central problem in computational biology. Most recent methods train support vector machines to discriminate between related and ...
Tony Håndstad, Arne J. H. Hestnes, Pål...
130
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BMCBI
2007
148views more  BMCBI 2007»
15 years 2 months ago
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
Background: This work addresses the problem of detecting conserved transcription factor binding sites and in general regulatory regions through the analysis of sequences from homo...
Giulio Pavesi, Federico Zambelli, Graziano Pesole
MMS
2008
15 years 2 months ago
Semantic interactive image retrieval combining visual and conceptual content description
We address the challenge of semantic gap reduction for image retrieval through an improved SVM-based active relevance feedback framework, together with a hybrid visual and concept...
Marin Ferecatu, Nozha Boujemaa, Michel Crucianu
129
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NAR
2006
119views more  NAR 2006»
15 years 2 months ago
ChloroplastDB: the Chloroplast Genome Database
The Chloroplast Genome Database (ChloroplastDB) is an interactive, web-based database for fully sequenced plastid genomes, containing genomic, protein, DNA and RNA sequences, gene...
Liying Cui, Narayanan Veeraraghavan, Alexander Ric...
NAR
2006
156views more  NAR 2006»
15 years 2 months ago
VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees
Variable order Markov models and variable order Bayesian trees have been proposed for the recognition of transcription factor binding sites, and it could be demonstrated that they...
Jan Grau, Irad E. Ben-Gal, Stefan Posch, Ivo Gross...