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» XSACT: A Comparison Tool for Structured Search Results
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NAR
2006
119views more  NAR 2006»
13 years 7 months ago
HHsenser: exhaustive transitive profile search using HMM-HMM comparison
HHsenser is the first server to offer exhaustive intermediate profile searches, which it combines with pairwise comparison of hidden Markov models. Starting from a single protein ...
Johannes Söding, Michael Remmert, Andreas Bie...
CIKM
2006
Springer
13 years 11 months ago
Evaluation by comparing result sets in context
Familiar evaluation methodologies for information retrieval (IR) are not well suited to the task of comparing systems in many real settings. These systems and evaluation methods m...
Paul Thomas, David Hawking
BMCBI
2008
121views more  BMCBI 2008»
13 years 7 months ago
A simple and fast heuristic for protein structure comparison
Background: Protein structure comparison is a key problem in bioinformatics. There exist several methods for doing protein comparison, being the solution of the Maximum Contact Ma...
David A. Pelta, Juan Ramón González,...
IV
2005
IEEE
170views Visualization» more  IV 2005»
14 years 1 months ago
POLYMECO - A Polygonal Mesh Comparison Tool
Polygonal meshes are used in many areas to model different objects and structures. Depending on their applications, they sometimes have to be processed to, for instance, reduce th...
Samuel S. Silva, Joaquim Madeira, Beatriz Sousa Sa...
BMCBI
2010
205views more  BMCBI 2010»
13 years 7 months ago
A fast indexing approach for protein structure comparison
Background: Protein structure comparison is a fundamental task in structural biology. While the number of known protein structures has grown rapidly over the last decade, searchin...
Lei Zhang, James Bailey, Arun Siddharth Konagurthu...