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ALMOB
2007
73views more  ALMOB 2007»
13 years 8 months ago
GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data
Background: One-dimensional (1-D) electrophoretic data obtained using the cDNA-AFLP method have attracted great interest for the identification of differentially expressed transcr...
Koji Kadota, Ryoko Araki, Yuji Nakai, Masumi Abe
ALMOB
2006
109views more  ALMOB 2006»
13 years 8 months ago
A novel functional module detection algorithm for protein-protein interaction networks
Background: The sparse connectivity of protein-protein interaction data sets makes identification of functional modules challenging. The purpose of this study is to critically eva...
Woochang Hwang, Young-Rae Cho, Aidong Zhang, Mural...
ALMOB
2006
138views more  ALMOB 2006»
13 years 8 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
ALMOB
2006
102views more  ALMOB 2006»
13 years 8 months ago
Mining, compressing and classifying with extensible motifs
Background: Motif patterns of maximal saturation emerged originally in contexts of pattern discovery in biomolecular sequences and have recently proven a valuable notion also in t...
Alberto Apostolico, Matteo Comin, Laxmi Parida
ALMOB
2006
110views more  ALMOB 2006»
13 years 8 months ago
Computing distribution of scale independent motifs in biological sequences
The use of Chaos Game Representation (CGR) or its generalization, Universal Sequence Maps (USM), to describe the distribution of biological sequences has been found objectionable ...
Jonas S. Almeida, Susana Vinga