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BMCBI
2007
239views more  BMCBI 2007»
13 years 10 months ago
Pre-processing Agilent microarray data
Background: Pre-processing methods for two-sample long oligonucleotide arrays, specifically the Agilent technology, have not been extensively studied. The goal of this study is to...
Marianna Zahurak, Giovanni Parmigiani, Wayne Yu, R...
TREC
2008
13 years 11 months ago
Distributed EDLSI, BM25, and Power Norm at TREC 2008
This paper describes our participation in the TREC Legal competition in 2008. Our first set of experiments involved the use of Latent Semantic Indexing (LSI) with a small number of...
April Kontostathis, Andrew Lilly, Raymond J. Spite...
BMCBI
2007
167views more  BMCBI 2007»
13 years 10 months ago
A stochastic differential equation model for transcriptional regulatory networks
Background: This work explores the quantitative characteristics of the local transcriptional regulatory network based on the availability of time dependent gene expression data se...
Adriana Climescu-Haulica, Michelle D. Quirk
BMCBI
2005
292views more  BMCBI 2005»
13 years 10 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
BMCBI
2006
118views more  BMCBI 2006»
13 years 10 months ago
Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration
Background: There is an ever increasing rate of data made available on genetic variation, transcriptomes and proteomes. Similarly, a growing variety of bioinformatic programs are ...
Erdahl T. Teber, Edward Crawford, Kent B. Bolton, ...