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ASAP
2007
IEEE
122views Hardware» more  ASAP 2007»
14 years 4 months ago
Parallelizing HMMER for Hardware Acceleration on FPGAs
Profile based Hidden Markov Model is a widely used tool in bioinformatics. While being very valuable to biologists, it is extremely compute intensive and suffers from prohibitive...
Steven Derrien, Patrice Quinton
FUZZIEEE
2007
IEEE
14 years 4 months ago
On Using Fuzzy Contact Maps for Protein Structure Comparison
The comparison of protein structures is an important problem in Bioinformatics, and Soft Computing techniques were recently introduced for achieving a better representation and po...
Juan Ramón González, David A. Pelta
ICALP
2007
Springer
14 years 3 months ago
Sharp Tractability Borderlines for Finding Connected Motifs in Vertex-Colored Graphs
We study the problem of finding occurrences of motifs in vertex-colored graphs, where a motif is a multiset of colors, and an occurrence of a motif is a subset of connected vertic...
Michael R. Fellows, Guillaume Fertin, Danny Hermel...
BIBM
2007
IEEE
139views Bioinformatics» more  BIBM 2007»
14 years 1 months ago
Automatic Identification of Temporal Sequences in Chewing Sounds
Chewing is an essential part of food intake. The analysis and detection of food patterns is an important component of an automatic dietary monitoring system. However chewing is a t...
Oliver Amft, Martin Kusserow, Gerhard Tröster
BIRD
2007
Springer
14 years 3 months ago
Analysing Periodic Phenomena by Circular PCA
Experimental time courses often reveal a nonlinear behaviour. Analysing these nonlinearities is even more challenging when the observed phenomenon is cyclic or oscillatory. This me...
Matthias Scholz