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BMCBI
2008
121views more  BMCBI 2008»
13 years 10 months ago
ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
Background: Detecting conserved noncoding sequences (CNSs) across species highlights the functional elements. Alignment procedures combined with computational prediction of transc...
Hisakazu Iwama, Yukio Hori, Kensuke Matsumoto, Koj...
BMCBI
2008
123views more  BMCBI 2008»
13 years 10 months ago
Functional module detection by functional flow pattern mining in protein interaction networks
eraction networks. In this abstract, we extend this approach by mining functional flow patterns for the purpose of detecting small-sized modules for specific functions. Methods Our...
Young-Rae Cho, Lei Shi, Aidong Zhang
BMCBI
2008
104views more  BMCBI 2008»
13 years 10 months ago
InteroPORC: an automated tool to predict highly conserved protein interaction networks
teps. First, we abstracted protein interactions onto orthologous cluster links. For a given source interaction, if both proteins belonged to a cluster, we constructed a link betwee...
Magali Michaut, Samuel Kerrien, Luisa Montecchi-Pa...
ICWS
2008
IEEE
13 years 11 months ago
Generalized Semantics-Based Service Composition
Service-oriented computing (SOC) has emerged as the eminent market environment for sharing and reusing service-centric capabilities. The underpinning for an organization's us...
Srividya Kona, Ajay Bansal, M. Brian Blake, Gopal ...
BMCBI
2008
169views more  BMCBI 2008»
13 years 10 months ago
MausDB: An open source application for phenotype data and mouse colony management in large-scale mouse phenotyping projects
Background: Large-scale, comprehensive and standardized high-throughput mouse phenotyping has been established as a tool of functional genome research by the German Mouse Clinic a...
Holger Maier, Christoph Lengger, Bruno Simic, Helm...