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BIOINFORMATICS
2010
13 years 10 months ago
2010
Motivation: Existing methods for protein sequence analysis are generally firstorder and inherently assume that each position is independent. We develop a general framework for int...
BIOINFORMATICS
2010
13 years 10 months ago
2010
Phylogenetic trees are widely used to display estimates of how groups of species evolved. Each phylogenetic tree can be seen as a collection of clusters, subgroups of the species ...
TC
2010
13 years 8 months ago
2010
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
BIBE
2010
IEEE
13 years 11 months ago
2010
IEEE
This manuscript presents the most rigorous benchmarking of gene annotation algorithms for metagenomic datasets to date. We compare three different programs: GeneMark, MetaGeneAnnot...
WABI
2010
Springer
13 years 8 months ago
2010
Springer
Abstract. The orientation of physical networks is a prime task in deciphering the signaling-regulatory circuitry of the cell. One manifestation of this computational task is as a m...