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BMCBI
2011
13 years 4 months ago
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Background: Bioinformatic analyses typically proceed as chains of data-processing tasks. A pipeline, or ‘workflow’, is a well-defined protocol, with a specific structure defin...
Marcin Cieslik, Cameron Mura
BIOINFORMATICS
2011
13 years 4 months ago
Algorithms for sorting unsigned linear genomes by the DCJ operations
Motivation: The double cut and join operation (abbreviated as DCJ) has been extensively used for genomic rearrangement. Although the DCJ distance between signed genomes with both ...
Haitao Jiang, Binhai Zhu, Daming Zhu
DNA
2011
Springer
213views Bioinformatics» more  DNA 2011»
12 years 9 months ago
Graph-Theoretic Formalization of Hybridization in DNA Sticker Complexes
Sticker complexes are a a formal graph-based data model for a restricted class of DNA complexes, motivated by potential applications to databases. This data model allows for a pure...
Robert Brijder, Joris J. M. Gillis, Jan Van den Bu...
BIOINFORMATICS
2011
13 years 1 months ago
libfbi: a C++ implementation for fast box intersection and application to sparse mass spectrometry data
Abstract. This document is a preprint of the following publication: Bioinformatics (2011) 27(8): 1166-1167. Algorithms for sparse data require fast search and subset selection capa...
Marc Kirchner, Buote Xu, Hanno Steen, Judith A. J....