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CSB
2004
IEEE
108views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Embedded Computation of Maximum-Likelihood Phylogeny Inference Using Platform FPGA
Our previous work to accelerate phylogeny inference using HW/SW(Hardware/Software) co-design has recently been extended to a more powerful embedded computing platform. In this pla...
Terrence S. T. Mak, Kai-Pui Lam
CSB
2004
IEEE
146views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Automated Protein Classification Using Consensus Decision
We propose a novel technique for automatically generating the SCOP classification of a protein structure with high accuracy. High accuracy is achieved by combining the decisions o...
Tolga Can, Orhan Çamoglu, Ambuj K. Singh, Y...
CSB
2004
IEEE
123views Bioinformatics» more  CSB 2004»
14 years 15 days ago
A New Hardware Architecture for Genomic and Proteomic Sequence Alignment
We describe a novel hardware architecture for genomic and proteomic sequence alignment which achieves a speed-up of two to three orders of magnitude over Smith-Waterman dynamic pr...
Greg Knowles, Paul Gardner-Stephen
CSB
2004
IEEE
173views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Gene Ontology Friendly Biclustering of Expression Profiles
The soundness of clustering in the analysis of gene expression profiles and gene function prediction is based on the hypothesis that genes with similar expression profiles may imp...
Jinze Liu, Wei Wang 0010, Jiong Yang
CSB
2004
IEEE
126views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Boosted PRIM with Application to Searching for Oncogenic Pathway of Lung Cancer
Boosted PRIM (Patient Rule Induction Method) is a new algorithm developed for two-class classification problems. PRIM is a variation of those Tree-Based methods ( [4] Ch9.3), seek...
Pei Wang, Young Kim, Jonathan R. Pollack, Robert T...