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ASAP
2004
IEEE
124views Hardware» more  ASAP 2004»
13 years 11 months ago
Biosequence Similarity Search on the Mercury System
Biosequence similarity search is an important application in modern molecular biology. Search algorithms aim to identify sets of sequences whose extensional similarity suggests a c...
Praveen Krishnamurthy, Jeremy Buhler, Roger D. Cha...
APBC
2004
154views Bioinformatics» more  APBC 2004»
13 years 9 months ago
Dispensation Order Generation for Pyrosequencing
This article describes a dispensation order generation algorithm for genotyping using the Pyrosequencing method. The input template of the algorithm is a slightly restricted regul...
Mats Carlsson, Nicolas Beldiceanu
APBC
2004
13 years 9 months ago
A Rapid Method of Whole Genome Visualisation Illustrating Features in Both Coding and Non-coding Regions
The application of Fourier analysis to a genome can be used as an indicator of gene coding regions. We have developed a visualisation of the Fourier spectra that allows convenient...
Ross Hall, Linda Stern
PSB
2004
13 years 9 months ago
Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures
ct The preferential conservation of transcription factor binding sites implies that non-coding sequence data from related species will prove a powerful asset to motif discovery. We...
Alan M. Moses, Derek Y. Chiang, Michael B. Eisen
PSB
2004
13 years 9 months ago
Motif Discovery in Heterogeneous Sequence Data
This paper introduces the first integrated algorithm designed to discover novel motifs in heterogeneous sequence data, which is comprised of coregulated genes from a single genome...
Amol Prakash, Mathieu Blanchette, Saurabh Sinha, M...