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DNA
2004
Springer
14 years 26 days ago
Parallelism in Gene Assembly
The process of gene assembly in ciliates, an ancient group of organisms, is one of the most complex instances of DNA manipulation known in any organisms. This process is fascinatin...
Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenber...
DNA
2004
Springer
14 years 26 days ago
Efficient Initial Pool Generation for Weighted Graph Problems Using Parallel Overlap Assembly
Most DNA computing algorithms for mathematical problems start with combinatorial generation of an initial pool. Several methods for initialpool generation have been proposed, inclu...
Ji Youn Lee, Hee-Woong Lim, Suk-In Yoo, Byoung-Tak...
VIS
2004
IEEE
116views Visualization» more  VIS 2004»
14 years 8 months ago
Immersive Design of DNA Molecules with a Tangible Interface
This paper presents an experimental immersive interface for designing DNAcomponents for application in nanotechnology. While much research has been done on immersive visualization...
Hiroshi Ishii, Peter Schröder, Steven Schkoln...
BMCBI
2004
91views more  BMCBI 2004»
13 years 7 months ago
Improved hit criteria for DNA local alignment
The hit criterion is a key component of heuristic local alignment algorithms. It specifies a class of patterns assumed to witness a potential similarity, and this choice is decisi...
Laurent Noé, Gregory Kucherov
SIGMOD
2004
ACM
109views Database» more  SIGMOD 2004»
14 years 7 months ago
Piers: An Efficient Model for Similarity Search in DNA Sequence Databases
Growing interest in genomic research has resulted in the creation of huge biological sequence databases. In this paper, we present a hash-based pier model for efficient homology s...
Xia Cao, Shuai Cheng Li, Beng Chin Ooi, Anthony K....