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TCBB
2008
107views more  TCBB 2008»
13 years 9 months ago
Progressive Tree Neighborhood Applied to the Maximum Parsimony Problem
Abstract-- The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from DNA sequences while minimizing the number of genetic transformations. To solve this NP-comp...
Adrien Goëffon, Jean-Michel Richer, Jin-Kao H...
DNA
2008
Springer
104views Bioinformatics» more  DNA 2008»
13 years 11 months ago
Self-assembly of Discrete Self-similar Fractals
In this paper, we search for theoretical limitations of the Tile Assembly Model (TAM), along with techniques to work around such limitations. Specifically, we investigate the self...
Matthew J. Patitz, Scott M. Summers
TCBB
2008
102views more  TCBB 2008»
13 years 9 months ago
Identification of Protein Coding Regions Using the Modified Gabor-Wavelet Transform
An important topic in genomic sequence analysis is the identification of protein coding regions. In this context, several coding DNA model-independent methods based on the occurren...
Jesus P. Mena-Chalco, Helaine Carrer, Yossi Zana, ...
EJC
2008
13 years 9 months ago
Pooling spaces associated with finite geometry
3 Motivated by the works of Ngo and Du [H. Ngo, D. Du, A survey on combinatorial group testing 4 algorithms with applications to DNA library screening, DIMACS Series in Discrete Ma...
Tayuan Huang, Kaishun Wang, Chih-wen Weng
DNA
2008
Springer
121views Bioinformatics» more  DNA 2008»
13 years 11 months ago
Isothermal Reactivating Whiplash PCR for Locally Programmable Molecular Computation
Whiplash PCR (WPCR), due to Hagiya et al. [1], is a novel technique for autonomous molecular computation where a state machine is implemented with a single stranded DNA molecule a...
John H. Reif, Urmi Majumder