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WOB
2003
140views Bioinformatics» more  WOB 2003»
13 years 11 months ago
Computing Maximum Subsequence in Parallel
The maximum subsequence problem finds the contiguous subsequence of n real numbers with the highest sum. This is an important problem that arises in several contexts in Computatio...
Carlos E. R. Alves, Edson Cáceres, Siang W....
BMCBI
2008
116views more  BMCBI 2008»
13 years 9 months ago
GBParsy: A GenBank flatfile parser library with high speed
Background: GenBank flatfile (GBF) format is one of the most popular sequence file formats because of its detailed sequence features and ease of readability. To use the data in th...
Tae-Ho Lee, Yeon-Ki Kim, Baek Hie Nahm
BMCBI
2008
123views more  BMCBI 2008»
13 years 9 months ago
Ori-Finder: A web-based system for finding oriCs in unannotated bacterial genomes
Background: Chromosomal replication is the central event in the bacterial cell cycle. Identification of replication origins (oriCs) is necessary for almost all newly sequenced bac...
Feng Gao, Chun-Ting Zhang
BMCBI
2008
123views more  BMCBI 2008»
13 years 9 months ago
Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach
Background: Eukaryotic promoter prediction using computational analysis techniques is one of the most difficult jobs in computational genomics that is essential for constructing a...
Firoz Anwar, Syed Murtuza Baker, Taskeed Jabid, Md...
BMCBI
2008
151views more  BMCBI 2008»
13 years 9 months ago
Application of the Linux cluster for exhaustive window haplotype analysis using the FBAT and Unphased programs
Background: Genetic association studies have been used to map disease-causing genes. A newly introduced statistical method, called exhaustive haplotype association study, analyzes...
Hiroyuki Mishima, Andrew C. Lidral, Jun Ni