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» eResearch Solutions for High Throughput Structural Biology
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BMCBI
2005
163views more  BMCBI 2005»
13 years 7 months ago
Alkahest NuclearBLAST: a user-friendly BLAST management and analysis system
Background -: Sequencing of EST and BAC end datasets is no longer limited to large research groups. Drops in per-base pricing have made high throughput sequencing accessible to in...
Stephen E. Diener, Thomas D. Houfek, Sam E. Kalat,...
BMCBI
2008
123views more  BMCBI 2008»
13 years 7 months ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra
CBMS
2008
IEEE
14 years 1 months ago
ProtCV: A Tool for Extracting, Visualizing and Validating Protein Clusters Using Mass Spectra Peak-Lists
We present ProtCV (Protein Clustering and Visualization) a new software tool for grouping samples (mass spectra peak-lists) emanating from a high throughput proteomics analysis ba...
Stavroula Ventoura, Eugenia G. Giannopoulou, Elias...
BMCBI
2007
128views more  BMCBI 2007»
13 years 7 months ago
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand bindin
Background: An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will l...
Lei Xie, Philip E. Bourne
DASFAA
2003
IEEE
108views Database» more  DASFAA 2003»
14 years 20 days ago
Spatial Query Processing for High Resolutions
Modern database applications including computeraided design (CAD), medical imaging, or molecular biology impose new requirements on spatial query processing. Particular problems a...
Hans-Peter Kriegel, Martin Pfeifle, Marco Pöt...