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IJBRA
2006
111views more  IJBRA 2006»
13 years 10 months ago
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
: Stochastic Context-Free Grammars (SCFG) has been shown to be effective in modelling RNA secondary structure for searches. Our previous work (Cai et al., 2003) in Stochastic Paral...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Co...
IJBRA
2006
59views more  IJBRA 2006»
13 years 10 months ago
Predicting altered pathways using extendable scaffolds
: Many diseases, especially solid tumors, involve the disruption or deregulation of cellular processes. Most current work using gene expression and other high-throughput data, simp...
B. M. Broom, T. J. McDonnell, D. Subramanian
IJBRA
2006
92views more  IJBRA 2006»
13 years 10 months ago
Jumpstarting phylogenetic analysis
: Phylogenetic analysis is a central tool in studies of comparative genomics. When a new region of DNA is isolated and sequenced, researchers are often forced to throw away months ...
Jesse Mecham, Mark J. Clement, Quinn Snell, Todd F...
IJBRA
2007
80views more  IJBRA 2007»
13 years 10 months ago
On predicting secondary structure transition
A function of a protein is dependent on its structure; therefore, predicting a protein structure from an amino acid sequence is an active area of research. Optimally predicting a ...
Raja Loganantharaj, Vivek Philip
IJBRA
2007
95views more  IJBRA 2007»
13 years 10 months ago
A novel stationary wavelet denoising algorithm for array-based DNA Copy Number data
Abstract: High-throughput array-based assays have recently been developed to detect DNA copy number (DCN) aberrations. The DCN data from these arrays is characterized by high level...
Yuhang Wang, Siling Wang