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JCB
2006
13 years 7 months ago
2006
For a model of molecular evolution to be useful for phylogenetic inference, the topology of evolutionary trees must be identifiable. That is, from a joint distribution the model p...
JCB
2000
13 years 7 months ago
2000
This article investigates aspects of pairwise and multiple structure comparison, and the problem of automatically discover common patterns in a set of structures. Descriptions and...
JCB
2000
13 years 7 months ago
2000
We present an implementation of McCaskill's algorithm for computing the base pair probabilities of an RNA molecule for massively parallel message passing architectures. The p...
JCB
2000
13 years 7 months ago
2000
A previously developed algorithmic method for identifying a geometric invariant of protein structures, termed geometrical core, is extended to the and 1 domains of immunoglobulin ...
JCB
2006
13 years 7 months ago
2006
We study the probability distribution of genomic distance d under the hypothesis of random gene order. We translate the random order assumption into a stochastic method for constr...