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JCB
2006
91views more  JCB 2006»
13 years 7 months ago
Reverse Engineering Discrete Dynamical Systems from Data Sets with Random Input Vectors
Recently a new algorithm for reverse engineering of biochemical networks was developed by Laubenbacher and Stigler. It is based on methods from computational algebra and finds mos...
Winfried Just
JCB
2006
185views more  JCB 2006»
13 years 7 months ago
Bayesian Sequential Inference for Stochastic Kinetic Biochemical Network Models
As postgenomic biology becomes more predictive, the ability to infer rate parameters of genetic and biochemical networks will become increasingly important. In this paper, we expl...
Andrew Golightly, Darren J. Wilkinson
JCB
2006
97views more  JCB 2006»
13 years 7 months ago
Wavelet Analysis of DNA Walks
A wavelet transform of the DNA "walk" constructed from a genomic sequence offers a direct visualization of short and long-range patterns in nucleotide sequences. We stud...
Adrian D. Haimovich, Bruce Byrne, Ramakrishna Rama...
JCB
2006
185views more  JCB 2006»
13 years 7 months ago
Identification of Amino Acid Latent Periodicity within 94 Protein Families
Here, we have applied information decomposition, cyclic profile alignment, and noise decomposition techniques to search for latent repeats within protein families of various funct...
Vera P. Turutina, Andrew A. Laskin, Nikolay A. Kud...
JCB
2000
137views more  JCB 2000»
13 years 7 months ago
NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees
Large scale gene duplication is a major force driving the evolution of genetic functional innovation. Whole genome duplications are widely believed to have played an important rol...
Kevin Chen, Dannie Durand, Martin Farach-Colton