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2003
ACM
14 years 1 months ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal
IPPS
2000
IEEE
14 years 28 days ago
Online Computation of Critical Paths for Multithreaded Languages
We have developed an instrumentation scheme that enables programs written in multithreaded languages to compute a critical path at run time.Our scheme gives not only the length (ex...
Yoshihiro Oyama, Kenjiro Taura, Akinori Yonezawa
SC
2000
ACM
14 years 27 days ago
Performance of Hybrid Message-Passing and Shared-Memory Parallelism for Discrete Element Modeling
The current trend in HPC hardware is towards clusters of shared-memory (SMP) compute nodes. For applications developers the major question is how best to program these SMP cluster...
D. S. Henty
SC
2000
ACM
14 years 27 days ago
Parallel Smoothed Aggregation Multigrid: Aggregation Strategies on Massively Parallel Machines
Algebraic multigrid methods offer the hope that multigrid convergence can be achieved (for at least some important applications) without a great deal of effort from engineers an...
Ray S. Tuminaro, Charles Tong
CVPR
2000
IEEE
14 years 10 months ago
Integrated 3D Scene Flow and Structure Recovery from Multiview Image Sequences
Scene ow is the 3D motion eld of points in the world. Given N (N > 1) image sequences gather ed with a N-eye stereo camera or N calibrated cameras, we present a novel system wh...
Ye Zhang, Chandra Kambhamettu