Sciweavers

RECOMB
2010
Springer
13 years 9 months ago
Subnetwork State Functions Define Dysregulated Subnetworks in Cancer
Abstract. Emerging research demonstrates the potential of proteinprotein interaction (PPI) networks in uncovering the mechanistic bases of cancers, through identification of intera...
Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, ...
RECOMB
2010
Springer
13 years 9 months ago
naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing
Immense amounts of raw instrument data (i.e., images of fluorescence) are currently being generated using ultra high-throughput sequencing platforms. An important computational cha...
Wei-Chun Kao, Yun S. Song
RECOMB
2010
Springer
13 years 9 months ago
Algorithms for Detecting Significantly Mutated Pathways in Cancer
Abstract. Recent genome sequencing studies have shown that the somatic mutations that drive cancer development are distributed across a large number of genes. This mutational heter...
Fabio Vandin, Eli Upfal, Benjamin J. Raphael
RECOMB
2010
Springer
13 years 9 months ago
Leveraging Sequence Classification by Taxonomy-Based Multitask Learning
In this work we consider an inference task that biologists are very good at: deciphering biological processes by bringing together knowledge that has been obtained by experiments u...
Christian Widmer, Jose Leiva, Yasemin Altun, Gunna...
RECOMB
2010
Springer
13 years 9 months ago
Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding
Raheleh Salari, Mathias Möhl, Sebastian Will,...
RECOMB
2010
Springer
13 years 9 months ago
An Algorithmic Framework for Predicting Side-Effects of Drugs
Abstract. One of the critical stages in drug development is the identification of potential side effects for promising drug leads. Large scale clinical experiments aimed at discove...
Nir Atias, Roded Sharan
CIBCB
2007
IEEE
13 years 9 months ago
Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms
—In metabolic engineering it is difficult to identify which set of genetic manipulations will result in a microbial strain that achieves a desired production goal, due to the co...
Miguel Rocha, José P. Pinto, Isabel Rocha, ...
ECCB
2005
IEEE
13 years 9 months ago
Analyzing microarray data using quantitative association rules
Elisabeth Georgii, Lothar Richter, Ulrich Rüc...
CIBCB
2006
IEEE
13 years 9 months ago
A New Hybrid Approach for Unsupervised Gene Selection
In recent years, unsupervised gene (feature) selection has become an integral part of microarray analysis because of the large number of genes and complexity in biological systems....
Young Bun Kim, Jean Gao
CIBCB
2005
IEEE
13 years 9 months ago
Pathway Analyst--Automated Metabolic Pathway Prediction
—Metabolic pathways are crucial to our understanding of biology. The speed at which new organisms are being sequenced is outstripping our ability to experimentally determine thei...
Luca Pireddu, Brett Poulin, Duane Szafron, Paul Lu...