Sciweavers

CIBCB
2005
IEEE
14 years 1 months ago
A Transcriptional Approach to Gene Clustering
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
Ilias Tagkopoulos
CIBCB
2005
IEEE
14 years 1 months ago
Neuro-fuzzy Prediction of Biological Activity and Rule Extraction for HIV-1 Protease Inhibitors
— A fuzzy neural network (FNN) and multiple linear regression (MLR) were used to predict biological activities of 26 newly designed HIV-1 protease potential inhibitory compounds....
Razvan Andonie, Levente Fabry-Asztalos, Catharine ...
ASM
2005
ASM
14 years 1 months ago
A Modular Design for the Common Language Runtime (CLR) Architecture
Abstract. This paper provides a modular high-level design of the Common Language Runtime (CLR) architecture. Our design is given in terms act State Machines (ASMs) and takes the fo...
Nicu G. Fruja
ASM
2010
ASM
14 years 1 months ago
Applying the B Method for the Rigorous Development of Smart Card Applications
Abstract. Smart Card applications usually require reliability and security to avoid incorrect operation or access violation in transactions and corruption or undue access to stored...
Bruno Emerson Gurgel Gomes, David Déharbe, ...
CIBCB
2008
IEEE
14 years 1 months ago
Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks
The concept of a network motif--a small set of interacting genes which produce a predictable behaviour at the network level--has attracted considerable attention amongst network an...
Jennifer Hallinan, Anil Wipat
ASM
2008
ASM
14 years 1 months ago
Formal Modeling and Analysis of a Flash Filesystem in Alloy
This paper describes the formal modeling and analysis of a design for a flash-based filesystem in Alloy. We model the basic operations of a filesystem as well as features that are ...
Eunsuk Kang, Daniel Jackson
ASM
2008
ASM
14 years 1 months ago
A First Attempt to Express KAOS Refinement Patterns with Event B
anguage (Event B), hence staying at the same abstraction level. Thus we take advantage from the Event B method: (i) it is possible to use the method during the whole development pr...
Abderrahman Matoussi, Frédéric Gerva...
ASM
2008
ASM
14 years 1 months ago
Modeling Workflows, Interaction Patterns, Web Services and Business Processes: The ASM-Based Approach
Abstract. We survey the use of the Abstract State Machines (ASM) method for a rigorous foundation of modeling and validating web services, workflows, interaction patterns and busin...
Egon Börger, Bernhard Thalheim
ASM
2008
ASM
14 years 1 months ago
A Concept-Driven Construction of the Mondex Protocol Using Three Refinements
Abstract. The Mondex case study concerns the formal development and verification of an electronic purse protocol. Several groups have worked on its specification and mechanical ver...
Gerhard Schellhorn, Richard Banach