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    CIBCB
    2005
    IEEE
    80views Computational Biology» more  CIBCB 2005»
    A Transcriptional Approach to Gene Clustering
    13 years 9 months ago
    A Transcriptional Approach to Gene Clustering
    Download  www.tagkopouloslab.cs.ucdavis.edu
    — We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
    Ilias Tagkopoulos
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    CIBCB
    2005
    IEEE
    91views Computational Biology» more  CIBCB 2005»
    Neuro-fuzzy Prediction of Biological Activity and Rule Extraction for HIV-1 Protease Inhibitors
    13 years 9 months ago
    Neuro-fuzzy Prediction of Biological Activity and Rule Extraction for HIV-1 Protease Inhibitors
    Download  www.cwu.edu
    — A fuzzy neural network (FNN) and multiple linear regression (MLR) were used to predict biological activities of 26 newly designed HIV-1 protease potential inhibitory compounds....
    Razvan Andonie, Levente Fabry-Asztalos, Catharine ...
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    ASM
    2005
    ASM
    107views Computational Biology» more  ASM 2005»
    A Modular Design for the Common Language Runtime (CLR) Architecture
    13 years 9 months ago
    A Modular Design for the Common Language Runtime (CLR) Architecture
    Download  www.lst.inf.ethz.ch
    Abstract. This paper provides a modular high-level design of the Common Language Runtime (CLR) architecture. Our design is given in terms act State Machines (ASMs) and takes the fo...
    Nicu G. Fruja
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    ASM
    2010
    ASM
    248views Computational Biology» more  ASM 2010»
    Applying the B Method for the Rigorous Development of Smart Card Applications
    13 years 9 months ago
    Applying the B Method for the Rigorous Development of Smart Card Applications
    Download  www.mendeley.com
    Abstract. Smart Card applications usually require reliability and security to avoid incorrect operation or access violation in transactions and corruption or undue access to stored...
    Bruno Emerson Gurgel Gomes, David Déharbe, ...
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    CIBCB
    2008
    IEEE
    84views Computational Biology» more  CIBCB 2008»
    Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks
    13 years 9 months ago
    Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks
    Download  www.staff.ncl.ac.uk
    The concept of a network motif--a small set of interacting genes which produce a predictable behaviour at the network level--has attracted considerable attention amongst network an...
    Jennifer Hallinan, Anil Wipat
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    ASM
    2008
    ASM
    103views Computational Biology» more  ASM 2008»
    Formal Modeling and Analysis of a Flash Filesystem in Alloy
    13 years 9 months ago
    Formal Modeling and Analysis of a Flash Filesystem in Alloy
    Download  alloy.mit.edu
    This paper describes the formal modeling and analysis of a design for a flash-based filesystem in Alloy. We model the basic operations of a filesystem as well as features that are ...
    Eunsuk Kang, Daniel Jackson
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    ASM
    2008
    ASM
    106views Computational Biology» more  ASM 2008»
    UseCase-Wise Development: Retrenchment for Event-B
    13 years 9 months ago
    UseCase-Wise Development: Retrenchment for Event-B
    Download  www.cs.man.ac.uk
    Richard Banach
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    ASM
    2008
    ASM
    157views Computational Biology» more  ASM 2008»
    A First Attempt to Express KAOS Refinement Patterns with Event B
    13 years 9 months ago
    A First Attempt to Express KAOS Refinement Patterns with Event B
    Download  pages.usherbrooke.ca
    anguage (Event B), hence staying at the same abstraction level. Thus we take advantage from the Event B method: (i) it is possible to use the method during the whole development pr...
    Abderrahman Matoussi, Frédéric Gerva...
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    ASM
    2008
    ASM
    194views Computational Biology» more  ASM 2008»
    Modeling Workflows, Interaction Patterns, Web Services and Business Processes: The ASM-Based Approach
    13 years 9 months ago
    Modeling Workflows, Interaction Patterns, Web Services and Business Processes: The ASM-Based Approach
    Download  www.di.unipi.it
    Abstract. We survey the use of the Abstract State Machines (ASM) method for a rigorous foundation of modeling and validating web services, workflows, interaction patterns and busin...
    Egon Börger, Bernhard Thalheim
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    ASM
    2008
    ASM
    110views Computational Biology» more  ASM 2008»
    A Concept-Driven Construction of the Mondex Protocol Using Three Refinements
    13 years 9 months ago
    A Concept-Driven Construction of the Mondex Protocol Using Three Refinements
    Download  www.cs.man.ac.uk
    Abstract. The Mondex case study concerns the formal development and verification of an electronic purse protocol. Several groups have worked on its specification and mechanical ver...
    Gerhard Schellhorn, Richard Banach
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